We could go crazy trying to list all the sites or stores for every single thing related to cycling, and you didn't specify in what area is your primary concern. In general Amazon has the best prices, but you have to be careful and ask the community if the seller is a factory authorized dealer for the product your buying, if not any warranty you might need to use is useless!
As far as various equipment and clothing you need to tell us what you're looking for so we don't set here and bang away on the keyboard like a raped ape!