Assume your old bike had a triple, since you mention "middle ring". Suggest you ride the bike a bit more to decide if you can live with the 34 middle ring. If not, changing to a standard road double with a 39 ring shouldn't cost too much: all you should need is a new crankset.
OTOH, if you do need lower gears for climbing, but decide you really miss your old 39 and 53 rings, spending the money to convert to the triple is worth it. The dealer might even give you a break on the components if you do it while the bike is still new.
BTW, I agree with you about the 39 ring. People I ride with say they like their 34/50 compacts, but to me the triple is a better option. I've only ridden a compact for a week on a rental bike, but it seemed I was shifting cogs a lot more, and often ended up crossed chained. Maybe it's just been to many decades riding with 42 and now 39 middle rings for me to change 🙂
Some people seem to "ride it all" without any complaints. A buddy here has all three cranks for his Trek Madone: std, compact and triple. He likes to do the "mountain challenge" centuries, and changes cranks several times a season to get the gearing he wants for each event.